miRBase entry: ath-MIR854b

Stem-loop ath-MIR854b


Accession
MI0005413
Description
Arabidopsis thaliana ath-MIR854b precursor miRNA
Gene family
MIPF0000361; MIR854

Literature search
5 open access papers mention ath-MIR854b
(19 sentences)

Sequence

cgGAUGAGGAUAGGGAGGAGGAGuaugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaacaacaguaaguugcagagguggugcaagaaacaagauagguuacuuaucaagugcuucaaggccaucacguuucugacggacaagauaaguugcuucucuucuaccacagcuauuccg
((((..((.....((((((((((((((((((......)))))).........((((.((((((....((......))..((((((.....)))))).......((((.....))))..)))))))))).................(((((((..((.(.(((((((......)))).))).).))..))))))))))))))))))).......))..))))

Structure
    UG  --GAUAG            ugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaacaacaguaaguugcagagguggugcaagaaacaagauagguu       aa  g u   -    ca 
cgGA  AG       GGAGGAGGAGua                                                                                                                        acuuauc  gu c uca aggc  u
||||  ||       ||||||||||||                                                                                                                        |||||||  || | ||| ||||   
gccu  uc       ucuucucuucgu                                                                                                                        ugaauag  ca g agu uuug  c
    ua  gacacca            ------------------------------------------------------------------------------------------------------------------------       aa  g c   c    ca 


Annotation confidence Not enough data
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Genome context
chr5: 11324370-11324590 [-]

Database links

Mature ath-miR854b

Accession MIMAT0004281
Description Arabidopsis thaliana ath-miR854b mature miRNA
Sequence 3 - GAUGAGGAUAGGGAGGAGGAG - 23
Evidence experimental
Northern [1]

References

  1. PubMed ID: 17189346
    A family of microRNAs present in plants and animals
    "Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP"
    "Plant Cell (2006) 18:3355-3369