Stem-loop sequence ath-MIR854a

Accession

MI0005412 (change log)

Description

Arabidopsis thaliana miR854a stem-loop

Gene family

MIPF0000361; MIR854

Literature search

5 open access papers mention ath-MIR854a
(22 sentences)

Stem-loop

       --u ag a   -          uaugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucauagaaacaaca 
5' cgga   g  g uag ggaggaggag                                                                                     g
   ||||   |  | ||| ||||||||||                                                                                     u
3' gccu   c  c auc ucuucucuuc                                                                                     a
       uau ga -   a          gucgaauagaacaggcagucuuugcacuaccgaaacuucgugaacuauucaucggauagaacaaagaacgugguggagacguuga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr5: 11847719-11847939 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR854a

• ath-MIR854c: chr5: 11838096-11838316 [+]
• ath-MIR854a: chr5: 11847719-11847939 [+]

Database links

• miRBase Tracker:MI0005412

Mature sequence ath-miR854a

• Accession: MIMAT0004280
• Sequence: 3 - gaugaggauagggaggaggag - 23
• Evidence: experimental; Northern [1]

References

1. PMID:17189346 "A family of microRNAs present in plants and animals" Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP Plant Cell. 18:3355-3369(2006).