Stem-loop sequence ath-MIR855

Accession

MI0005411 (change log)

Description

Arabidopsis thaliana miR855 stem-loop

Literature search

1 open access papers mention ath-MIR855
(2 sentences)

Stem-loop

   uuuugga         aag  -      --a       ac     u   u      uua    ggagugucgaucgacacacucuuggugucgaucgacaccaguuucggcccagcaaaaacccuagacgcuuucgagu 
5'        gcaaaagcu   ga aaagga   gauaagg  gauuu ggu cuggaa   gcga                                                                            u
          |||||||||   || ||||||   |||||||  ||||| ||| ||||||   ||||                                                                            u
3'        cguuuucga   cu uuuucu   cuauuuu  uugaa cca gauuuu   uguu                                                                            a
   accaaaa         --a  a      gaa       cu     u   -      ---    auauauaucugggauuuuugcaggugccugauuauuacguuuauuacuuuagaagaucccguuugaacucgagaac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr2: 4674427-4674698 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005411

Mature sequence ath-miR855

• Accession: MIMAT0004279
• Sequence: 7 - agcaaaagcuaaggaaaaggaa - 28
• Evidence: experimental; Northern [1]

References

1. PMID:17189346 "A family of microRNAs present in plants and animals" Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP Plant Cell. 18:3355-3369(2006).