miRBase entry: ath-MIR855

Stem-loop ath-MIR855


Accession
MI0005411
Description
Arabidopsis thaliana ath-MIR855 precursor miRNA

Literature search
1 open access papers mention ath-MIR855
(2 sentences)

Sequence

uuuuggAGCAAAAGCUAAGGAAAAGGAAgauaaggacgauuuugguucuggaauuagcgaggagugucgaucgacacacucuuggugucgaucgacaccaguuucggcccagcaaaaacccuagacgcuuucgaguuuacaagagcucaaguuugcccuagaagauuucauuauuugcauuauuaguccguggacguuuuuagggucuauauauauuguuuuuagaccuaaguuucuuuuaucaagucuuuuaucaagcuuuugcaaaacca
.......(((((((((..((.((((((.((((((((.(((((.(((.((((((..(((((((.((((((((((((((.(....)))))))))))))))..((((..((...))..)))))))...))))...((((((....))))))......((((((((((..(((((...(((......)))...)))))..)))))))))).............))))))))).))))))).))))))...)))))).)).))))))))).......

Structure
uuuuggA         AA  A      --A      -  c     u   u      uuagcgaggagugucgaucgacacacucuuggugucgaucgacaccaguuucggcccagcaaaaacccuagacgcuuucgaguuuacaagagcucaaguuu          au     uau   ca 
       GCAAAAGCU  GG AAAGGA   gauaag ga gauuu ggu cuggaa                                                                                                     gcccuagaag  uucau   uug  u
       |||||||||  || ||||||   |||||| || ||||| ||| ||||||                                                                                                     ||||||||||  |||||   |||   
       cguuuucga  cu uuuucu   cuauuu cu uugaa cca gauuuu                                                                                                     ugggauuuuu  aggug   gau  u
accaaaa         -a  a      gaa      u  -     u   -      ----------------------------------------------------------------------------------------uguuauauauauc          gc     ccu   ua 


Annotation confidence Not enough data
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Genome context
chr2: 4674427-4674698 [+]

Database links

Mature ath-miR855

Accession MIMAT0004279
Description Arabidopsis thaliana ath-miR855 mature miRNA
Sequence 7 - AGCAAAAGCUAAGGAAAAGGAA - 28
Evidence experimental
Northern [1]

References

  1. PubMed ID: 17189346
    A family of microRNAs present in plants and animals
    "Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP"
    "Plant Cell (2006) 18:3355-3369