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miRBase |
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Stem-loop sequence ath-MIR824 |
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Accession | MI0005409 (change log) | ||||
Description | Arabidopsis thaliana miR824 stem-loop | ||||
Gene family | MIPF0000442; MIR824 | ||||
Literature search |
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7 open access papers mention ath-MIR824 | ||||
Stem-loop |
u u a ----------- ug u u uuuuguuuac - c - g a uaaga --au - ---a aacauagcuaguucgacauaccauacuacccuuuuuaaaacuauccuauauguuugaugcuagcauagcguaauuuuguguucucauggugcagcaggguuaguuuauuguguaccucuagauauauauucucuugcugcguaggguucccaagcugccaaaaacuuuuaaaaauuagugaucuguuccccaaacccccauucaauaagaaaggucuac 5' aucaccauu gu cuu gagu ucuc caugucuagaccauu gugagaagggagu accaa ua c cccca ucucuaa uuug aguauu gcu c auuaagg c ||||||||| || ||| |||| |||| ||||||||||||||| ||||||||||||| ||||| || | ||||| ||||||| |||| |||||| ||| | ||||||| u 3' uagugguaa ca gaa cuca ggag guguagaucugguag uacucuucccuua ugguu gu g ggggu agggguu aaau uuauaa cga g ugguucc g - - a auggagguacu gu c c -------uau u a a g a cuaug gaau u guac acauuuacuaaaauauacuaaaacucuuagccgaaccugaucaagcuuauguuuauuuuuuucaauacauacguuguagaccuuuucaguacuuacuugaauuagcugaaugaagauauggauugaagacuuccuagucugaaaguaucccauugauuaauugauuuugucauuuggguuucuucguuccugucgagauuaucgacacugacacucgau |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence ath-miR824-5p |
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Accession | MIMAT0004277 |
Previous IDs | ath-miR824 |
Sequence |
35 - uagaccauuugugagaaggga - 55 |
Evidence | experimental; 454 [1-2], Northern [1,3], cloned [2], Illumina [4] |
Mature sequence ath-miR824-3p |
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Accession | MIMAT0032024 |
Sequence |
628 - ccuucucaucgauggucuaga - 648 |
Evidence | not experimental |
References |
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1 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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2 |
PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
PLoS One. 2:e219(2007).
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3 |
PMID:17704216
"MicroRNA-mediated regulation of stomatal development in Arabidopsis"
Plant Cell. 19:2417-2429(2007).
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4 |
PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
J Exp Bot. 61:165-177(2010).
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