Stem-loop sequence ath-MIR824

Accession

MI0005409 (change log)

Description

Arabidopsis thaliana miR824 stem-loop

Gene family

MIPF0000442; MIR824

Literature search

7 open access papers mention ath-MIR824
(25 sentences)

Stem-loop

   u         u  a   -----------    ug    u               u             uuuuguuuac     -  c -     g       a    uaaga      --au   - ---a       aacauagcuaguucgacauaccauacuacccuuuuuaaaacuauccuauauguuugaugcuagcauagcguaauuuuguguucucauggugcagcaggguuaguuuauuguguaccucuagauauauauucucuugcugcguaggguucccaagcugccaaaaacuuuuaaaaauuagugaucuguuccccaaacccccauucaauaagaaaggucuac 
5'  aucaccauu gu cuu           gagu  ucuc caugucuagaccauu gugagaagggagu          accaa ua c cccca ucucuaa uuug     aguauu    gcu c    auuaagg                                                                                                                                                                                                                           c
    ||||||||| || |||           ||||  |||| ||||||||||||||| |||||||||||||          ||||| || | ||||| ||||||| ||||     ||||||    ||| |    |||||||                                                                                                                                                                                                                           u
3'  uagugguaa ca gaa           cuca  ggag guguagaucugguag uacucuucccuua          ugguu gu g ggggu agggguu aaau     uuauaa    cga g    ugguucc                                                                                                                                                                                                                           g
   -         -  a   auggagguacu    gu    c               c             -------uau     u  a a     g       a    cuaug      gaau   u guac       acauuuacuaaaauauacuaaaacucuuagccgaaccugaucaagcuuauguuuauuuuuuucaauacauacguuguagaccuuuucaguacuuacuugaauuagcugaaugaagauauggauugaagacuuccuagucugaaaguaucccauugauuaauugauuuugucauuuggguuucuucguuccugucgagauuaucgacacugacacucgau 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr4: 12625094-12625782 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000796863_3702
• miRBase Tracker:MI0005409

Mature sequence ath-miR824-5p

• Accession: MIMAT0004277
• Previous IDs: ath-miR824
• Sequence: 35 - uagaccauuugugagaaggga - 55
• Evidence: experimental; 454 [1-2], Northern [1,3], cloned [2], Illumina [4]

Mature sequence ath-miR824-3p

• Accession: MIMAT0032024
• Sequence: 628 - ccuucucaucgauggucuaga - 648
• Evidence: not experimental

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).
3. PMID:17704216 "MicroRNA-mediated regulation of stomatal development in Arabidopsis" Kutter C, Schob H, Stadler M, Meins F Jr, Si-Ammour A Plant Cell. 19:2417-2429(2007).
4. PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).