Stem-loop sequence ath-MIR846

Accession

MI0005402 (change log)

Description

Arabidopsis thaliana miR846 stem-loop

Gene family

MIPF0001189; MIR846

Literature search

4 open access papers mention ath-MIR846
(12 sentences)

Stem-loop

   -caaa   --c      ---   uu  -ggu   u        ugccac   c   u c       g     u         a   u   u     c   a  a  u            u     c    a         auucaagggacaaaaaaucauugggauauaugauuaugacaaacac 
5'      cau   uugaau   ccg  ga    uga cacgauga      auc ggu u auucaag acuuc auucagaac aac uca gauuu uga cu au ggauaugauaaa gguaa aagu uucacuugc                                              g
        |||   ||||||   |||  ||    ||| ||||||||      ||| ||| | ||||||| ||||| ||||||||| ||| ||| ||||| ||| || || |||||||||||| ||||| |||| |||||||||                                               
3'      gua   agcuua   ggc  cu    gcu guguuauu      uag cca a uaaguuc ugaag uaaguuuug uug agu cugaa gcu ga ua ccuauacuauuu ucauu uuca aggugaacg                                              a
   aacca   auc      aau   -c  augu   c        ------   a   c u       g     u         a   u   u     a   c  c  c            -     c    a         ucuaguaauagggugacgaacggagggcguugguaagucgaagguu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 22577375-22577733 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR846

• ath-MIR842: chr1: 22577067-22577265 [+]
• ath-MIR846: chr1: 22577375-22577733 [+]

Database links

• RNAcentral:URS00007B8C9E_3702
• miRBase Tracker:MI0005402

Mature sequence ath-miR846-5p

• Accession: MIMAT0032023
• Sequence: 52 - cauucaaggacuucuauucag - 72
• Evidence: not experimental

Mature sequence ath-miR846-3p

• Accession: MIMAT0004269
• Previous IDs: ath-miR846
• Sequence: 288 - uugaauugaagugcuugaauu - 308
• Evidence: experimental; 454 [1], Northern [1], cloned [2], Illumina [3]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).
3. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
4. PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).
5. PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).