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miRBase |
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Stem-loop sequence ath-MIR846 |
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Accession | MI0005402 (change log) | |||||
Description | Arabidopsis thaliana miR846 stem-loop | |||||
Gene family | MIPF0001189; MIR846 | |||||
Literature search |
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4 open access papers mention ath-MIR846 | |||||
Stem-loop |
-caaa --c --- uu -ggu u ugccac c u c g u a u u c a a u u c a auucaagggacaaaaaaucauugggauauaugauuaugacaaacac 5' cau uugaau ccg ga uga cacgauga auc ggu u auucaag acuuc auucagaac aac uca gauuu uga cu au ggauaugauaaa gguaa aagu uucacuugc g ||| |||||| ||| || ||| |||||||| ||| ||| | ||||||| ||||| ||||||||| ||| ||| ||||| ||| || || |||||||||||| ||||| |||| ||||||||| 3' gua agcuua ggc cu gcu guguuauu uag cca a uaaguuc ugaag uaaguuuug uug agu cugaa gcu ga ua ccuauacuauuu ucauu uuca aggugaacg a aacca auc aau -c augu c ------ a c u g u a u u a c c c - c a ucuaguaauagggugacgaacggagggcguugguaagucgaagguu |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence ath-miR846-5p |
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Accession | MIMAT0032023 |
Sequence |
52 - cauucaaggacuucuauucag - 72 |
Evidence | not experimental |
Mature sequence ath-miR846-3p |
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Accession | MIMAT0004269 |
Previous IDs | ath-miR846 |
Sequence |
288 - uugaauugaagugcuugaauu - 308 |
Evidence | experimental; 454 [1], Northern [1], cloned [2], Illumina [3] |
References |
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1 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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2 |
PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
PLoS One. 2:e219(2007).
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3 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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4 |
PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
J Exp Bot. 61:165-177(2010).
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5 |
PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
J Exp Bot. 61:165-177(2010).
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