Stem-loop sequence ath-MIR843

AccessionMI0005399 (change log)
DescriptionArabidopsis thaliana miR843 stem-loop
Literature search

2 open access papers mention ath-MIR843
(4 sentences)

Stem-loop 
   aaugcccaaca      c       c      c    u    a uu                    u     caa         ca       auuacuaaa   a 
5'            acuucg guuauuu ugaaaa uuca aucu u  ucuuuuaggucgagcuucau ggaac   augguggcu  uccaucu         gcu u
              |||||| ||||||| |||||| |||| |||| |  |||||||||||||||||||| |||||   |||||||||  |||||||         |||  
3'            ugaagu caauaaa acuuuu gagu uaga a  agaaaaucuagcucgaagug ccuug   uacuaccga  aggugga         cga a
   caccucuuaca      a       a      a    u    c uc                    u     uac         ac       ---------   c
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr3: 17742098-17742302 [+]
intergenic
Database links

Mature sequence ath-miR843

Accession MIMAT0004265
Sequence

50 -  

uuuaggucgagcuucauugga

 - 70

Get sequence
Evidence experimental; 454 [1], cloned [2], Illumina [3]

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).
3
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).