Stem-loop sequence ath-MIR833a

Accession

MI0005389 (change log)

Previous IDs

ath-MIR833

Description

Arabidopsis thaliana miR833 stem-loop

Gene family

MIPF0001186; MIR833

Literature search

2 open access papers mention ath-MIR833a
(3 sentences)

Stem-loop

   ----  ac    a  guac     c     g    c     a          g             u  -                  aa    c  u 
5'     gg  guag ug    ucuua agaug ugau gugaa acaaacggag aguuuguuuguug ac ucggucuaguucaaacca  acau uu g
       ||  |||| ||    ||||| ||||| |||| ||||| |||||||||| ||||||||||||| || ||||||||||||||||||  |||| ||  
3'     cc  cguc gc    agaau ucuac acua cacuu uguuugcuuc ucgaacaaacaac ug agccagaucgaguuuggu  ugua aa c
   cuca  -a    -  --aa     u     a    c     a          g             -  u                  -a    u  a 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 29525151-29525337 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR833a

• ath-MIR833a: chr1: 29525151-29525337 [+]
• ath-MIR833b: chr1: 29525202-29525286 [-]

Database links

• RNAcentral:URS00007AA633_3702
• miRBase Tracker:MI0005389

Mature sequence ath-miR833a-5p

• Accession: MIMAT0004252
• Previous IDs: ath-miR833-5p
• Sequence: 54 - uguuuguuguacucggucuagu - 75
• Evidence: experimental; 454 [1-2], cloned [2]

Mature sequence ath-miR833a-3p

• Accession: MIMAT0004253
• Previous IDs: ath-miR833-3p
• Sequence: 115 - uagaccgaugucaacaaacaag - 136
• Evidence: experimental; 454 [1-2], cloned [2]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).