Stem-loop sequence ath-MIR828

AccessionMI0005384 (change log)
DescriptionArabidopsis thaliana miR828 stem-loop
Gene family MIPF0000544; MIR828
Literature search

9 open access papers mention ath-MIR828
(30 sentences)

Stem-loop 
   gugacaaagucacaaaagugauaaacucuccu          u      u                 uc    uaaaaau      -       g 
5'                                 uuccacuuuc aauguu cuugcuuaaaugaguau  caug       gauuca cucacuc u
                                   |||||||||| |||||| |||||||||||||||||  ||||       |||||| |||||||  
3'                                 agggugaagg uuguaa gaacgaguuuacucgua  guac       uugggu ggguggg a
   uuuucuauuuugaguauguacuauaauuuauc          u      c                 ga    uucucuu      u       u
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr4: 13846971-13847161 [+]
intergenic
Database links

Mature sequence ath-miR828

Accession MIMAT0004244
Sequence

50 -  

ucuugcuuaaaugaguauucca

 - 71

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Evidence experimental; 454 [1]

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).