miRBase entry: ath-MIR827

Stem-loop ath-MIR827


Accession
MI0005383
Description
Arabidopsis thaliana ath-MIR827 precursor miRNA
Gene family
MIPF0001113; MIR827_3

Literature search
9 open access papers mention ath-MIR827
(35 sentences)

Sequence

uuccaugaaacguuauagguuuuuuucuuucucucuugcaacccuugaauguguuuguugauugauaucuacacauguugaucauccuuguguugaucgauugguUUAGAUGACCAUCAACAAACUcuuucgugguuuugcaucgcuucuuggaaucucgaucauguuuuuagcauc
(((((.(((.((....(((......)))........(((((.((.((((.(.((((((((((.(.((((((.((..((((((((.........))))))))..)).)))))).).)))))))))).).)))).))..))))).)).))).)))))........(((((...))))).

Structure
----------------------     u   a  uuauagguuuuuuucuuucucucu     -c  u    u u          u a      c  au        ucc 
                      uucca gaa cg                        ugcaa  cc ugaa g guuuguugau g uaucua ac  guugauca   u
                      ||||| ||| ||                        |||||  || |||| | |||||||||| | |||||| ||  ||||||||   u
                      aaggu cuu gc                        acguu  gg gcuu c CAAACAACUA C GUAGAU ug  uagcuagu   g
cuacgauuuuuguacuagcucu     u   c  -----------------------u     uu  u    u U          C A      U  gu        ugu 


Annotation confidence Not enough data
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Genome context
chr3: 22122760-22122936 [-]

Database links

Mature ath-miR827

Accession MIMAT0004243
Description Arabidopsis thaliana ath-miR827 mature miRNA
Sequence 106 - UUAGAUGACCAUCAACAAACU - 126
Evidence experimental
454 [1-2], cloned [2], Illumina [3]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  3. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219