Stem-loop sequence ath-MIR827

AccessionMI0005383 (change log)
DescriptionArabidopsis thaliana miR827 stem-loop
Gene family MIPF0001113; MIR827_3
Literature search

9 open access papers mention ath-MIR827
(35 sentences)

Stem-loop 
   uuccaugaaacguuauagguuuuuuucuuucucucu     -c  u    u u          u a      c  au        ucc 
5'                                     ugcaa  cc ugaa g guuuguugau g uaucua ac  guugauca   u
                                       |||||  || |||| | |||||||||| | |||||| ||  ||||||||   u
3'                                     acguu  gg gcuu c caaacaacua c guagau ug  uagcuagu   g
   -cuacgauuuuuguacuagcucuaagguucuucgcu     uu  u    u u          c a      u  gu        ugu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr3: 22122760-22122936 [-]
intergenic
Database links

Mature sequence ath-miR827

Accession MIMAT0004243
Sequence

106 -  

uuagaugaccaucaacaaacu

 - 126

Get sequence
Evidence experimental; 454 [1-2], cloned [2], Illumina [3]

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).
3
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).