Stem-loop sequence ath-MIR826a

Accession

MI0005382 (change log)

Previous IDs

ath-MIR826

Description

Arabidopsis thaliana miR826 stem-loop

Literature search

3 open access papers mention ath-MIR826a
(21 sentences)

Stem-loop

   agagacguggaugcuucucguccacaaguucuuu   -  cuc     u      c                   --------     u  ua 
5'                                   ggu gc   uauga auaguc gguuuuggauacgugaaaa        ucaua ca  u
                                     ||| ||   ||||| |||||| |||||||||||||||||||        ||||| ||   
3'                                   ucg cg   auacu uauuag ccaaaaccugugcacuuuu        agugu gu  u
   cauucucaucguccuuuuucuacuauucuaugug   u  -uu     c      a                   aauugaaa     c  cg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr4: 1340479-1340656 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR826a

• ath-MIR826a: chr4: 1340479-1340656 [+]
• ath-MIR826b: chr4: 1340521-1340614 [-]

Database links

• RNAcentral:URS000056861F_3702
• miRBase Tracker:MI0005382

Mature sequence ath-miR826a

• Accession: MIMAT0004242
• Previous IDs: ath-miR826
• Sequence: 50 - uaguccgguuuuggauacgug - 70
• Evidence: experimental; 454 [1]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).