miRBase entry: ath-MIR825

Stem-loop ath-MIR825


Accession
MI0005381
Description
Arabidopsis thaliana ath-MIR825 precursor miRNA
Gene family
MIPF0001178; MIR825

Literature search
2 open access papers mention ath-MIR825
(2 sentences)

Sequence

cuuucuauaauuacuuuuuguauagaauucacuaguugauuccaucgacucguucaagcaccagcucgaagaagcuuagcuaauuuaucuuagaaaauaaugaaaaagcuaugcUUCUCAAGAAGGUGCAUGAACaaguugauguauauuuugauguguaaagaccaaaauuggaucucacaugug
..(((((((...........)))))))...............((((((((.(((((.(((((..((.((.(((((.(((((..(((((...........)))))..))))).))))))).))..))))).))))).)))))))).........(((((...((((((....))).))))))))...

Structure
cuuucuauaauuacuuuuuguauagaauucacuaguugauuc        c     a     ag  c  a     u     aa     cuua 
                                          caucgacu guuca gcacc  cu ga gaagc uagcu  uuuau    g
                                          |||||||| ||||| |||||  || || ||||| |||||  |||||    a
                                          guaguuga CAAGU CGUGG  GA CU CUUcg aucga  aagua    a
guguacacucuagguuaaaaccagaaauguguaguuuuauau        a     A     AA  A  -     u     aa     auaa 


Annotation confidence Not enough data
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Genome context
chr2: 11159660-11159845 [+]

Database links

Mature ath-miR825

Accession MIMAT0004241
Description Arabidopsis thaliana ath-miR825 mature miRNA
Sequence 115 - UUCUCAAGAAGGUGCAUGAAC - 135
Evidence experimental
454 [1], cloned [2]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219