miRBase entry: ath-MIR822

Stem-loop ath-MIR822


Accession
MI0005379
Description
Arabidopsis thaliana ath-MIR822 precursor miRNA
Gene family
MIPF0001199; MIR822

Literature search
4 open access papers mention ath-MIR822
(6 sentences)

Sequence

cgaccuuaaguauaaguagauauauggggauguaacgcauguuguuuucUGCGGGAAGCAUUUGCACAUGuuucguggagaaugaaaucacauuccauacaugaauaauaauuaccuuuuagauagaacaucguacugcuugaaaaaacauguuaaugucauaaacuuuaugaugaaaacaccuauaaaaagcguuuuuucaagcaugugcuaucuaugaagguaauuacuauucauguauaaaauaugauuuuauccuccauaaaacaUGUGCAAAUGCUUUCUACAGGaaacaauauacguugcauccccaucuacuuacacuuaaggucguugu
(((((((((((.((((((((....(((((((((((((.(((((((((((((.(((((((((((((((((((((.((((((.(((((((((.(((..(((((((((((.((((((((((((((((((.(((......(((((((((((((.((((...(((((((...)))))))...))))............)))))))))))))))).))))))).))))))))))).)))))))))))..))).))))))))).)))))).))))))))))))))))))))).))))))))))))).))))))))))))))))))))).)))))))))))....

Structure
----           a        uaua             c             C                     c      a         c   cc           a           -       a   ucguac             -----------a    aau       a 
    cgaccuuaagu uaaguaga    uggggauguaacg auguuguuuucUG GGGAAGCAUUUGCACAUGuuu guggag augaaauca auu  auacaugaaua uaauuaccuuu uagauag aca      ugcuugaaaaaac            uguu   gucauaa  
    ||||||||||| ||||||||    ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||  ||||||||||| ||||||||||| ||||||| |||      |||||||||||||            ||||   ||||||| c
    gcuggaauuca auucaucu    accccuacguugc uauaacaaaGGAC UCUUUCGUAAACGUGUacaaa uaccuc uauuuuagu uaa  uauguacuuau auuaauggaag aucuauc ugu      acgaacuuuuuug            acaa   uaguauu  
uguu           c        ----             a             A                     a      c         a   aa           c           u       g   ------             cgaaaaauaucc    aag       u 


Annotation confidence Not enough data
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Genome context
chr5: 897020-897356 [-]

Database links

Mature ath-miR822-5p

Accession MIMAT0004239
Description Arabidopsis thaliana ath-miR822-5p mature miRNA
Sequence 50 - UGCGGGAAGCAUUUGCACAUG - 70
Evidence experimental
454 [1], Illumina [2]

Mature ath-miR822-3p

Accession MIMAT0032018
Description Arabidopsis thaliana ath-miR822-3p mature miRNA
Sequence 270 - UGUGCAAAUGCUUUCUACAGG - 290
Evidence not_experimental

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177