miRBase entry: mdo-mir-302a

Stem-loop mdo-mir-302a


Accession
MI0005373
Description
Monodelphis domestica mdo-mir-302a precursor miRNA
Gene family
MIPF0000071; mir-302


Sequence

15 reads, 1 reads per million, 2 experiments
cccacuacuuaaacguggauuuacuugcuuuguuucuaaaaaagUAAGUGCUUCCAUGUUUUAGugaugg
.(((.((((.(((((((((..((((((((((.........))))))))))..))))))))).)))).)))

Structure
c   c    u         uu          guu 
 cca uacu aaacgugga  uacuugcuuu   u
 ||| |||| |||||||||  ||||||||||   c
 ggu guGA UUUGUACCU  GUGAAUgaaa   u
-   a    U         UC          aaa 


Annotation confidence Not enough data
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Genome context
chr5: 66074649-66074718 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mdo-mir-302a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-302a

Accession MIMAT0004182
Description Monodelphis domestica mdo-miR-302a mature miRNA
Sequence 45 - UAAGUGCUUCCAUGUUUUAG - 64
Evidence not_experimental

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72