miRBase entry: mdo-mir-302b

Stem-loop mdo-mir-302b


Accession
MI0005371
Description
Monodelphis domestica mdo-mir-302b precursor miRNA
Gene family
MIPF0000071; mir-302


Sequence

25 reads, 1 reads per million, 4 experiments
ccccuucuacuuuaacauggagguacuuucuguguuuaaaaaggUAAGUGCUUCCAUGUUUUGGuaggagu
...((((((((..((((((((((((((((((..........))).)))))))))))))))..)))))))).

Structure
ccc        uu               -   gugu 
   cuucuacu  aacauggagguacuu ucu    u
   ||||||||  ||||||||||||||| |||     
   gaggauGG  UUGUACCUUCGUGAA gga    u
--u        UU               U   aaaa 


Annotation confidence Not enough data
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Genome context
chr5: 66075008-66075078 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mdo-mir-302b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-302b

Accession MIMAT0004180
Description Monodelphis domestica mdo-miR-302b mature miRNA
Sequence 45 - UAAGUGCUUCCAUGUUUUGG - 64
Evidence not_experimental

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72