miRBase entry: mdo-let-7f-1

Stem-loop mdo-let-7f-1


Accession
MI0005361
Description
Monodelphis domestica mdo-let-7f-1 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

1751651 reads, 27835 reads per million, 5 experiments
ucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCCuga
((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))

Structure
    a U                       ---------       u 
ucag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| | |||||||||||||||||||||||         ||||||| a
aguC C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
    - C                       gaggacuug       u 


Annotation confidence Not enough data
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Genome context
chr6: 256412444-256412530 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-let-7f-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-let-7f-5p

Accession MIMAT0004161
Description Monodelphis domestica mdo-let-7f-5p mature miRNA
Sequence 7 - UGAGGUAGUAGAUUGUAUAGUU - 28
Evidence experimental
PCR [1], Illumina [2]
Database links
Predicted targets

Mature mdo-let-7f-1-3p

Accession MIMAT0026702
Description Monodelphis domestica mdo-let-7f-1-3p mature miRNA
Sequence 63 - CUAUACAAUCUAUUGCCUUCCC - 84
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45