miRBase entry: mdo-mir-92a-1

Stem-loop mdo-mir-92a-1


Accession
MI0005359
Description
Monodelphis domestica mdo-mir-92a-1 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

56189 reads, 996 reads per million, 5 experiments
cuuucuacacAGGUUGGGAUCAGUUGCAAUGCUgugucugucuguagUAUUGCACUUGUCCCGGCCUGUugaguuugg
....((..((((((((((((.(((.(((((((((.(.....)..)))))))))))).))))))))))))..)).....

Structure
-cuuu  ac            C   U         -u u 
     cu  acAGGUUGGGAU AGU GCAAUGCUg  g c
     ||  |||||||||||| ||| |||||||||  | u
     ga  UGUCCGGCCCUG UCA CGUUAUgau  c g
gguuu  gu            U   -         gu u 


Annotation confidence High
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Genome context
chr7: 108468191-108468268 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mdo-mir-92a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-92a-3p

Accession MIMAT0004171
Description Monodelphis domestica mdo-miR-92a-3p mature miRNA
Sequence 48 - UAUUGCACUUGUCCCGGCCUGU - 69
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mdo-miR-92a-1-5p

Accession MIMAT0026709
Description Monodelphis domestica mdo-miR-92a-1-5p mature miRNA
Sequence 11 - AGGUUGGGAUCAGUUGCAAUGCU - 33
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45