Stem-loop mdo-mir-19b-1

Accession

MI0005358

Description

Monodelphis domestica mdo-mir-19b-1 precursor miRNA

Gene family

MIPF0000011; mir-19

Sequence

3861 reads, 78 reads per million, 5 experiments

gcacuguucuaugguuAGUUUUGCAGGUUUGCAUCCAGCuguaugauauucugcUGUGCAAAUCCAUGCAAAACUGAcugugguggugg
.((((...(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))).)))).

Structure

g    guu                 -  -      UC    uguau 
 cacu   cuaugguuAGUUUUGCA GG UUUGCA  CAGC     g
 ||||   ||||||||||||||||| || ||||||  ||||     a
 gugg   ggugucAGUCAAAACGU CC AAACGU  GUcg     u
g    --u                 A  U      --    ucuua 

Annotation confidence High

Genome context

chr7: 108468305-108468393 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdo-mir-19b-1

Mature mdo-miR-19b-3p

• Accession: MIMAT0004170
• Description: Monodelphis domestica mdo-miR-19b-3p mature miRNA
• Sequence: 55 - UGUGCAAAUCCAUGCAAAACUGA - 77
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-19b-1-5p

• Accession: MIMAT0026708
• Description: Monodelphis domestica mdo-miR-19b-1-5p mature miRNA
• Sequence: 17 - AGUUUUGCAGGUUUGCAUCCAGC - 39
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45