miRBase entry: mdo-mir-20a

Stem-loop mdo-mir-20a


Accession
MI0005357
Description
Monodelphis domestica mdo-mir-20a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

17515 reads, 297 reads per million, 5 experiments
ugaaaggacagcuuuuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuACUGCAUUAUGAGCACUUGAAGUacugcuagcuguagaacuac
.......((((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).))))))........

Structure
-ugaaagg      uuu    c   -A                 G   uguu 
        acagcu   guag acU  AAGUGCUUAUAGUGCAG UAG    u
        ||||||   |||| |||  ||||||||||||||||| |||    a
        ugucga   cguc UGA  UUCACGAGUAUUACGUC Auc    g
caucaaga      --u    a   AG                 -   uauu 


Annotation confidence High
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Genome context
chr7: 108468430-108468531 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mdo-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-20a-5p

Accession MIMAT0004169
Description Monodelphis domestica mdo-miR-20a-5p mature miRNA
Sequence 24 - UAAAGUGCUUAUAGUGCAGGUAG - 46
Evidence experimental
Illumina [2]

Mature mdo-miR-20a-3p

Accession MIMAT0026707
Description Monodelphis domestica mdo-miR-20a-3p mature miRNA
Sequence 60 - ACUGCAUUAUGAGCACUUGAAGU - 82
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45