miRBase entry: mdo-let-7a-3

Stem-loop mdo-let-7a-3


Accession
MI0005350
Description
Monodelphis domestica mdo-let-7a-3 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

2640892 reads, 45516 reads per million, 5 experiments
ggggUGAGGUAGUAGGUUGUAUAGUUugggggucgcucccucugucugugagauaacuauacagucuacugucuuuccc
.(((.((((((((((((((((((((..(((((.....)))))(((((...))))))))))))))))))))))))).)))

Structure
g   U                    -----------Uu     u 
 ggg GAGGUAGUAGGUUGUAUAGU             ggggg c
 ||| ||||||||||||||||||||             ||||| g
 ccc uucugucaucugacauauca             cuccc c
-   u                    auagagugucugu     u 


Annotation confidence High
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Genome context
chr8: 11049697-11049775 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-let-7a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-let-7a-5p

Accession MIMAT0004141
Description Monodelphis domestica mdo-let-7a-5p mature miRNA
Sequence 5 - UGAGGUAGUAGGUUGUAUAGUU - 26
Evidence experimental
Microarray [1], PCR [1]
Database links
Predicted targets

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72