Stem-loop mdo-mir-200b

Accession

MI0005345

Description

Monodelphis domestica mdo-mir-200b precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

26929 reads, 528 reads per million, 5 experiments

ccAUCUUACUGGGCAGCAUUGGAuggugucuguguuucUAAUACUGCCUGGUAAUGAUGAugaugggg
.(((((((((((((((.((((((.............)))))).))))))))))).)))).........

Structure

--------c    -           C      uggug 
         cAUC UUACUGGGCAG AUUGGA     u
         |||| ||||||||||| ||||||     c
         GUAG AAUGGUCCGUC UAAUcu     u
gggguaguA    U           A      uugug 

Annotation confidence High

Genome context

chr4: 389166960-389167027 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-200b

Mature mdo-miR-200b-3p

• Accession: MIMAT0004156
• Description: Monodelphis domestica mdo-miR-200b-3p mature miRNA
• Sequence: 39 - UAAUACUGCCUGGUAAUGAUGA - 60
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-200b-5p

• Accession: MIMAT0026700
• Description: Monodelphis domestica mdo-miR-200b-5p mature miRNA
• Sequence: 3 - AUCUUACUGGGCAGCAUUGGA - 23
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45