miRBase entry: mdo-mir-16-1

Stem-loop mdo-mir-16-1


Accession
MI0005334
Description
Monodelphis domestica mdo-mir-16-1 precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

19803 reads, 364 reads per million, 5 experiments
gucaacagugccuUAGCAGCACGUAAAUAUUGGCGuuaagauuuuaaaaguaucuCCAGUAUUAACUGUGCUGCUGAAguaagguuggcc
((((((..(((.((((((((((((.((((((((.....((((.........)))))))))))).)).)))))))))).)))..)))))).

Structure
-      ag   c          -  A        CGuua    uuu 
 gucaac  ugc uUAGCAGCAC GU AAUAUUGG     agau   a
 ||||||  ||| |||||||||| || ||||||||     ||||   a
 cgguug  aug AGUCGUCGUG CA UUAUGACC     ucua   a
c      ga   A          U  A        -----    uga 


Annotation confidence High
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Genome context
chr4: 318199560-318199649 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-16-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-16-5p

Accession MIMAT0004145
Description Monodelphis domestica mdo-miR-16-5p mature miRNA
Sequence 14 - UAGCAGCACGUAAAUAUUGGCG - 35
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mdo-miR-16-1-3p

Accession MIMAT0026690
Description Monodelphis domestica mdo-miR-16-1-3p mature miRNA
Sequence 56 - CCAGUAUUAACUGUGCUGCUGAA - 78
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45