miRBase entry: mdo-mir-338

Stem-loop mdo-mir-338


Accession
MI0005325
Description
Monodelphis domestica mdo-mir-338 precursor miRNA
Gene family
MIPF0000097; mir-338


Sequence

20484 reads, 337 reads per million, 5 experiments
ggccuuccuccccaacaauauccugaugcugagugagcggcacauggagacUCCAGCAUCAGUGAUUUUGUUGAagaggguggcugcca
((((.(((((..((((((.(((((((((((((((...((.....))...))).))))))))).))).))))))..))))).))))....

Structure
----    u     cc      u   -         -   gag  g 
    ggcc uccuc  caacaa auc cugaugcug agu   cg c
    |||| |||||  |||||| ||| ||||||||| |||   || a
    ucgg gggag  GUUGUU UAG GACUACGAC Uca   gu c
accg    u     aA      U   U         C   gag  a 


Annotation confidence High
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Genome context
chr2: 233883739-233883827 [+]

Database links

Mature mdo-miR-338

Accession MIMAT0004136
Description Monodelphis domestica mdo-miR-338 mature miRNA
Sequence 52 - UCCAGCAUCAGUGAUUUUGUUGA - 74
Evidence experimental
Microarray [1], PCR [1]
Database links
Predicted targets

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72