miRBase entry: mdo-mir-218-1

Stem-loop mdo-mir-218-1


Accession
MI0005322
Description
Monodelphis domestica mdo-mir-218-1 precursor miRNA
Gene family
MIPF0000026; mir-218


Sequence

6081 reads, 103 reads per million, 5 experiments
ugauuauguggcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugugagguaugaguaaaacAUGGUUCUGUCAAGCACCAUGgaacgucacgcagcuuucuaca
.......((.(((.(((.((((((.(((((((((..((((((((.....(.(....).).....))))))))..))))))))).)))))).))).))).))........

Structure
-ugauuau  g   a   u      U         CU        gguug g g 
        gu gcg gau uucugU GUGCUUGAU  AACCAUGU     u a g
        || ||| ||| |||||| |||||||||  ||||||||     | |  
        cg cgc cug aagGUA CACGAACUG  UUGGUAca     a u u
acaucuuu  a   a   c      C         UC        aaaug g a 


Annotation confidence Not enough data
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Genome context
chr5: 208287227-208287335 [-]

Database links

Mature mdo-miR-218-5p

Accession MIMAT0004133
Description Monodelphis domestica mdo-miR-218-5p mature miRNA
Sequence 24 - UUGUGCUUGAUCUAACCAUGU - 44
Evidence experimental
Illumina [1]

Mature mdo-miR-218-1-3p

Accession MIMAT0026680
Description Monodelphis domestica mdo-miR-218-1-3p mature miRNA
Sequence 67 - AUGGUUCUGUCAAGCACCAUG - 87
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45