miRBase entry: mdo-mir-216

Stem-loop mdo-mir-216


Accession
MI0005320
Description
Monodelphis domestica mdo-mir-216 precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

44 reads, 1 reads per million, 4 experiments
gauggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGagauguuaauaaauucccucacaguggucucugggauuaugcuaaacagagcaauuuc
....(((.((..(((((.(((((((((..(((.((((((((...............)))))))).))).))))))))).))))).)).)))......

Structure
--gaug   g  aa     u         CU   A        auguua 
      gcu ug  uuggc UAAUCUCAG  GGC ACUGUGag      a
      ||| ||  ||||| |||||||||  ||| ||||||||      u
      cga ac  aaucg auuaggguc  cug ugacacuc      a
cuuuaa   g  -a     u         -u   g        ccuuaa 


Annotation confidence Not enough data
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Genome context
chr1: 638493848-638493944 [+]

Database links

Mature mdo-miR-216

Accession MIMAT0004131
Description Monodelphis domestica mdo-miR-216 mature miRNA
Sequence 19 - UAAUCUCAGCUGGCAACUGUG - 39
Evidence experimental
Microarray [1], PCR [1]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72