miRBase entry: mdo-mir-214

Stem-loop mdo-mir-214


Accession
MI0005319
Description
Monodelphis domestica mdo-mir-214 precursor miRNA
Gene family
MIPF0000062; mir-214


Sequence

367 reads, 10 reads per million, 5 experiments
gggcuggcuggacggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccucucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure
gggcu      acgga           u          ACA            aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     u
----u      -----           u          CAC            cacuc 


Annotation confidence Not enough data
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Genome context
chr2: 64368078-64368187 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-214-3p

Accession MIMAT0004130
Description Monodelphis domestica mdo-miR-214-3p mature miRNA
Sequence 71 - ACAGCAGGCACAGACAGGCAG - 91
Evidence experimental
Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-214-5p

Accession MIMAT0026679
Description Monodelphis domestica mdo-miR-214-5p mature miRNA
Sequence 30 - UGCCUGUCUACACUUGCUGUGC - 51
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45