Stem-loop mdo-mir-135a

Accession

MI0005297

Description

Monodelphis domestica mdo-mir-135a precursor miRNA

Gene family

MIPF0000028; mir-135

Sequence

4675 reads, 88 reads per million, 5 experiments

agauaaauucacucuagugucuUAUGGCUUUUUAUUCCUAUGUGAuaguaauaaagucucAUGUAGGGAUGGAAGCCAUGAAauacauugugaaauguca
.((((..(((((....((((.(((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))).))))...))))).)))).

Structure

a    aa     ucua    c           U            u g a 
 gaua  uucac    gugu uUAUGGCUUUU AUUCCUAUGUGA a u a
 ||||  |||||    |||| ||||||||||| |||||||||||| | | u
 cugu  aagug    caua AGUACCGAAGG UAGGGAUGUAcu u a a
a    -a     -uua    A           -            c g a 

Annotation confidence High

Genome context

chr8: 74872640-74872739 [+]

Mature mdo-miR-135a-5p

• Accession: MIMAT0004108
• Description: Monodelphis domestica mdo-miR-135a-5p mature miRNA
• Sequence: 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-135a-3p

• Accession: MIMAT0026666
• Description: Monodelphis domestica mdo-miR-135a-3p mature miRNA
• Sequence: 61 - AUGUAGGGAUGGAAGCCAUGAA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45