miRBase entry: mdo-mir-107

Stem-loop mdo-mir-107


Accession
MI0005286
Description
Monodelphis domestica mdo-mir-107 precursor miRNA
Gene family
MIPF0000024; mir-103


Sequence

4079 reads, 74 reads per million, 5 experiments
cuucuuucugcuuucggcuucucuacaguguugccuuguggcguggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcauaga
..(((...((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))

Structure
cu   uuc      --c    u  c           c   u   g 
  ucu   ugcuuu   ggcu cu uacaguguugc uug ggc u
  |||   ||||||   |||| || ||||||||||| ||| ||| g
  aga   acgaaA   UCGG GA AUGUUACGACG Aac uug g
--   --u      CUA    -  C           -   -   a 


Annotation confidence Not enough data
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Genome context
chr1: 81981106-81981189 [+]

Database links

Mature mdo-miR-107

Accession MIMAT0004100
Description Monodelphis domestica mdo-miR-107 mature miRNA
Sequence 53 - AGCAGCAUUGUACAGGGCUAUCA - 75
Evidence experimental
Microarray [1], PCR [1]
Database links
Predicted targets

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72