miRBase entry: mdo-mir-100

Stem-loop mdo-mir-100


Accession
MI0005281
Description
Monodelphis domestica mdo-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

439990 reads, 10012 reads per million, 5 experiments
ccuguugccacaAACCCGUAGAUCCGAACUUGUggugauauuccacacAAGCUUGUGUCUAUAGGUAUGugucugucagg
((((....((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).....))))

Structure
    -uugc    A   C      C   A      g  au 
ccug     caca ACC GUAGAU CGA CUUGUg ug  a
||||     |||| ||| |||||| ||| |||||| ||   
ggac     guGU UGG UAUCUG GUU GAAcac ac  u
    ugucu    A   A      U   C      -  cu 


Annotation confidence High
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Genome context
chr4: 226180101-226180180 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-100-5p

Accession MIMAT0004097
Description Monodelphis domestica mdo-miR-100-5p mature miRNA
Sequence 13 - AACCCGUAGAUCCGAACUUGU - 33
Evidence experimental
Microarray [1], PCR [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-100-3p

Accession MIMAT0026656
Description Monodelphis domestica mdo-miR-100-3p mature miRNA
Sequence 49 - AAGCUUGUGUCUAUAGGUAUG - 69
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45