miRBase entry: mdo-mir-34a

Stem-loop mdo-mir-34a


Accession
MI0005280
Description
Monodelphis domestica mdo-mir-34a precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

3057 reads, 65 reads per million, 5 experiments
ggccagcugugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUUgugaguaauagauaaggaagcAAUCAGCAAGUAUACUGCCCUAgaagugcugcacguuguuaggccc
((((((((((((((((((((..(((((((((((.((((((((((..................))))))))))))).))))))))..))))))))).))))..))).)))).

Structure
-    -   --    -         uU        -   A          gugaguaa 
 ggcc agc  ugug aguguuucu  GGCAGUGU CUU GCUGGUUGUU        u
 |||| |||  |||| |||||||||  |||||||| ||| ||||||||||         
 ccgg uug  gcac ucgugaagA  CCGUCAUA GAA CGACUAAcga        a
c    a   uu    g         UC        U   -          aggaauag 


Annotation confidence High
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Genome context
chr4: 433575257-433575367 [+]

Database links

Mature mdo-miR-34a-5p

Accession MIMAT0004096
Description Monodelphis domestica mdo-miR-34a-5p mature miRNA
Sequence 22 - UGGCAGUGUCUUAGCUGGUUGUU - 44
Evidence experimental
Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-34a-3p

Accession MIMAT0026655
Description Monodelphis domestica mdo-miR-34a-3p mature miRNA
Sequence 66 - AAUCAGCAAGUAUACUGCCCUA - 87
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45