miRBase entry: mdo-mir-30a

Stem-loop mdo-mir-30a


Accession
MI0005277
Description
Monodelphis domestica mdo-mir-30a precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

2793799 reads, 46590 reads per million, 5 experiments
gcggcUGUAAACAUCCUCGACUGGAAGcugugaagcagcagauggggcUUUCAGUCGGAUGUUUGCAGCugc
((((((((((((((((..(((((((((((.(............).)))))))))))))))))))))))))))

Structure
                UC           g gaagc 
gcggcUGUAAACAUCC  GACUGGAAGcu u     a
||||||||||||||||  ||||||||||| |      
cguCGACGUUUGUAGG  CUGACUUUcgg g     g
                --           g uagac 


Annotation confidence High
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Genome context
chr2: 322692512-322692583 [-]

Database links

Mature mdo-miR-30a-5p

Accession MIMAT0004093
Description Monodelphis domestica mdo-miR-30a-5p mature miRNA
Sequence 6 - UGUAAACAUCCUCGACUGGAAG - 27
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mdo-miR-30a-3p

Accession MIMAT0026652
Description Monodelphis domestica mdo-miR-30a-3p mature miRNA
Sequence 49 - UUUCAGUCGGAUGUUUGCAGC - 69
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45