Stem-loop mdo-mir-10a

Accession

MI0005273

Description

Monodelphis domestica mdo-mir-10a precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

1054869 reads, 17651 reads per million, 5 experiments

cugucuucuguauaUACCCUGUAGAUCCGAAUUUGUGuaaggaauuuuguggucacAAAUUCGUAUCUAGGGGAAUAuguaguugacaua
.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))..

Structure

-c    uu        A    G     C          uaaggaa 
  uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
  ||||  |||||||| |||| ||||| ||||||||||        
  acag  gauguAUA GGGG AUCUA GCUUAAAcac       u
au    uu        A    -     U          ugguguu 

Annotation confidence High

Genome context

chr2: 201156732-201156821 [-]

Mature mdo-miR-10a-5p

• Accession: MIMAT0004089
• Description: Monodelphis domestica mdo-miR-10a-5p mature miRNA
• Sequence: 15 - UACCCUGUAGAUCCGAAUUUGUG - 37
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-10a-3p

• Accession: MIMAT0026648
• Description: Monodelphis domestica mdo-miR-10a-3p mature miRNA
• Sequence: 57 - AAAUUCGUAUCUAGGGGAAUA - 77
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45