miRBase entry: osa-MIR821a

Stem-loop osa-MIR821a


Accession
MI0005266
Description
Oryza sativa osa-MIR821a precursor miRNA
Gene family
MIPF0000350; MIR821

Literature search
1 open access papers mention osa-MIR821a
(5 sentences)

Sequence

117 reads, 34 reads per million, 2 experiments
gauaucagcugaaaAAGUCAUCAACAAAAAAGUUGAAUaacucaucaagaucuaaaacuuuuauuuuggucauuucuucauacgacaaagugauaguaacauuguucacagaauugacauaucucuuaucugguuuuauaaacuauaacacauauauguaaaauuugugaauaauauuacuaacauuucgucagaugaagaaauaaaaaaauaaaaguuauagaucuugaugaguuauucaacuuuguuguugaugacuuuuucaauugaaauc
(((.((((.((((((((((((((((((.((((((((((((((((((((((((((.((((((((((((....((((((((((..(((.(((((.((((((.((((((((((((.((.((((((........((((((...))))))........)))))).)).)))))))))))).)))))).))))).)))..))))))))))...)))))))))))).)))))))))))))))))))))))))).)))))))))))))))))).)))).)))

Structure
   a    c                  A                          a            gguc          ac   a     a      c            a  g      cucuuauc      u 
gau ucag ugaaaAAGUCAUCAACAA AAAGUUGAAUaacucaucaagaucua aacuuuuauuuu    auuucuucau  gac aagug uaguaa auuguucacaga uu acauau        ugguuu  
||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    ||||||||||  ||| ||||| |||||| |||||||||||| || ||||||        |||||| a
cua aguu acuuuuucaguaguuguu uuucaacuuauugaguaguucuagau uugaaaauaaaa    uaaagaagua  cug uuuac aucauu uaauaaguguuu aa uguaua        aucaaa  
   a    a                  g                          a            -aaa          ga   c     a      a            a  a      uacacaau      u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
miR821 was misnamed miR584 by Luo et al [1].

Genome context
Chr3: 22974225-22974498 [+]

Database links

Mature osa-miR821a

Accession MIMAT0004082
Description Oryza sativa osa-miR821a mature miRNA
Sequence 15 - AAGUCAUCAACAAAAAAGUUGAAU - 38
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 16959252
    Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
    "FEBS Lett (2006) 580:5111-5116