Stem-loop sequence osa-MIR812d

Accession

MI0005236 (change log)

Description

Oryza sativa miR812d stem-loop

Gene family

MIPF0000345; MIR812

Literature search

10 open access papers mention osa-MIR812d
(16 sentences)

Stem-loop

      a      a       a    c      cgaaaaa     aaaaaaaaacaagucacgcauaaaguauuauuc 
5' cgu uccaac uuugauc ucug cuuauu       uuuau                                 a
   ||| |||||| ||||||| |||| ||||||       |||||                                 u
3' gca agguug aaauugg aggc gaauaa       aaaua                                 g
      c      c       c    a      augaaaa     cuaaucauaaaaauaacaagaauauacuauuuu 

Deep sequencing

3996 reads, 900 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

• Coordinates (MSU7): Chr7: 22395223-22395375 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005236

Mature sequence osa-miR812d

• Accession: MIMAT0004052
• Sequence: 129 - gacggacgguuaaacguuggac - 150
• Deep sequencing: 3769 reads, 2 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS00003701FC_39947

References

1. PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development" Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH FEBS Lett. 580:5111-5116(2006).