miRBase entry: mmu-mir-742

Stem-loop mmu-mir-742


Accession
MI0005206
Symbol
MGI: Mir742
Description
Mus musculus mmu-mir-742 precursor miRNA
Gene family
MIPF0000412; mir-742

Literature search
3 open access papers mention mmu-mir-742
(5 sentences)

Sequence

591 reads, 486 reads per million, 25 experiments
ugcucUACUCACAUGGUUGCUAAUCAcgugaaguguagguGAAAGCCACCAUGCUGGGUAAAgua
((((.((((((((((((.(((..((((.((.....)).)))).))).)))))).)))))).))))

Structure
    c      -      U   AA    g  a 
ugcu UACUCA CAUGGU GCU  UCAc ug a
|||| |||||| |||||| |||  |||| || g
augA AUGGGU GUACCA CGA  AGug au u
    A      C      C   -A    g  g 


Annotation confidence High
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Genome context
chrX: 66780373-66780437 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mmu-mir-742
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-742-5p

Accession MIMAT0004838
Description Mus musculus mmu-miR-742-5p mature miRNA
Sequence 6 - UACUCACAUGGUUGCUAAUCA - 26
Evidence experimental
cloned [2], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-742-3p

Accession MIMAT0004237
Description Mus musculus mmu-miR-742-3p mature miRNA
Sequence 41 - GAAAGCCACCAUGCUGGGUAAA - 62
Evidence experimental
cloned [1-2], 454 [3], Illumina [4-5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  5. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102