Stem-loop sequence mmu-mir-742

Accession

MI0005206 (change log)

Symbol

MGI:Mir742

Description

Mus musculus miR-742 stem-loop

Gene family

MIPF0000412; mir-742

Literature search

3 open access papers mention mmu-mir-742
(5 sentences)

Stem-loop

       c      -      u   aa    g  a 
5' ugcu uacuca cauggu gcu  ucac ug a
   |||| |||||| |||||| |||  |||| || g
3' auga augggu guacca cga  agug au u
       a      c      c   -a    g  g 

Deep sequencing

888 reads, 88 reads per million, 25 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 66780373-66780437 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-742

• mmu-mir-883b: chrX: 66789890-66789967 [-]
• mmu-mir-883a: chrX: 66780758-66780833 [-]
• mmu-mir-742: chrX: 66780373-66780437 [-]
• mmu-mir-743b: chrX: 66777256-66777332 [-]
• mmu-mir-743a: chrX: 66776757-66776818 [-]

Database links

• EntrezGene:Mir742
• MGI:Mir742
• RNAcentral:URS000075E7CC_10090
• miRBase Tracker:MI0005206

Mature sequence mmu-miR-742-5p

• Accession: MIMAT0004838
• Previous IDs: mmu-miR-742*
• Sequence: 6 - uacucacaugguugcuaauca - 26
• Deep sequencing: 303 reads, 19 experiments
• Evidence: experimental; cloned [2], Illumina [4-5]
• Database links:
  • RNAcentral:URS00004C7BF0_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-742-5p
  • miRDB:mmu-miR-742-5p
  • microrna.org:mmu-miR-742-5p

Mature sequence mmu-miR-742-3p

• Accession: MIMAT0004237
• Previous IDs: mmu-miR-742
• Sequence: 41 - gaaagccaccaugcuggguaaa - 62
• Deep sequencing: 585 reads, 24 experiments
• Evidence: experimental; cloned [1-2], 454 [3], Illumina [4-5]
• Database links:
  • RNAcentral:URS000054F121_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-742-3p
  • miRDB:mmu-miR-742-3p
  • microrna.org:mmu-miR-742-3p

References

1. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).