miRBase entry: cel-mir-800

Stem-loop cel-mir-800


Accession
MI0005201
Description
Caenorhabditis elegans cel-mir-800 precursor miRNA


Sequence

268 reads, 22 reads per million, 10 experiments
acggcggcUGACAAUUUCCGAGUUAGGCCAcucuuauaaucagugGCCAAACUCGGAAAUUGUCUGCcgccgu
((((((((.(((((((((((((((.(((((((.........))))))).))))))))))))))).))))))))

Structure
        U               A       cuu 
acggcggc GACAAUUUCCGAGUU GGCCAcu   a
|||||||| ||||||||||||||| |||||||   u
ugccgcCG CUGUUAAAGGCUCAA CCGguga   a
        U               A       cua 


Annotation confidence High
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Genome context
chrX: 380919-380991 [-]

Database links

Mature cel-miR-800-3p

Accession MIMAT0004235
Description Caenorhabditis elegans cel-miR-800-3p mature miRNA
Sequence 46 - GCCAAACUCGGAAAUUGUCUGC - 67
Evidence experimental
454 [1], Illumina [2-3]
Database links
Predicted targets

Mature cel-miR-800-5p

Accession MIMAT0020354
Description Caenorhabditis elegans cel-miR-800-5p mature miRNA
Sequence 9 - UGACAAUUUCCGAGUUAGGCCA - 30
Evidence experimental
Illumina [3]
Database links

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  3. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577