miRBase entry: cel-mir-796

Stem-loop cel-mir-796


Accession
MI0005197
Description
Caenorhabditis elegans cel-mir-796 precursor miRNA


Sequence

82953 reads, 473 reads per million, 15 experiments
acucuaaugacaagcUGGAAUGUAGUUGAGGUUAGUAAaagcacuauacuuguuacaaaccuugccacguuccgacuugucaaaagagu
(((((..(((((((.((((((((.((.((((((.(((((((.......))).)))).)))))))).)))))))).)))))))..)))))

Structure
     aa       c        A  U      A    -   ca 
acucu  ugacaag UGGAAUGU GU GAGGUU GUAA aag  c
|||||  ||||||| |||||||| || |||||| |||| |||  u
ugaga  acuguuc gccuugca cg uuccaa cauu uuc  a
     aa       a        c  -      a    g   au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 1798928-1799016 [-]

Database links

Mature cel-miR-796

Accession MIMAT0004231
Description Caenorhabditis elegans cel-miR-796 mature miRNA
Sequence 16 - UGGAAUGUAGUUGAGGUUAGUAA - 38
Evidence experimental
454 [1], Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54