miRBase entry: cel-mir-795

Stem-loop cel-mir-795


Accession
MI0005196
Description
Caenorhabditis elegans cel-mir-795 precursor miRNA

Literature search
5 open access papers mention cel-mir-795
(7 sentences)

Sequence

79999 reads, 417 reads per million, 16 experiments
gaaacguuaccugcUGAGGUAGAUUGAUCAGCGAGCUUgauaccccguucaaAAUCGUGAUCAGUAUACUUCGUCaggcagcuuguuuu
((((((((.((((.(((((((.((((((((.(((..((((........))))..))))))))))).))))))).)))).)))..)))))

Structure
     --   a    c       G        G   GC    uac 
gaaac  guu ccug UGAGGUA AUUGAUCA CGA  UUga   c
|||||  ||| |||| ||||||| |||||||| |||  ||||    
uuuug  cga ggaC GCUUCAU UGACUAGU GCU  aacu   c
     uu   c    U       A        -   AA    ugc 


Annotation confidence High
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Genome context
chrI: 12594569-12594657 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-795
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-795-5p

Accession MIMAT0004230
Description Caenorhabditis elegans cel-miR-795-5p mature miRNA
Sequence 15 - UGAGGUAGAUUGAUCAGCGAGCUU - 38
Evidence experimental
454 [1], Illumina [2,4], CLIPseq [3]
Database links
Predicted targets

Mature cel-miR-795-3p

Accession MIMAT0020353
Description Caenorhabditis elegans cel-miR-795-3p mature miRNA
Sequence 53 - AAUCGUGAUCAGUAUACUUCGUC - 75
Evidence experimental
Illumina [4]
Database links

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  3. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179

  4. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577