miRBase entry: cel-mir-794

Stem-loop cel-mir-794


Accession
MI0005195
Description
Caenorhabditis elegans cel-mir-794 precursor miRNA

Literature search
6 open access papers mention cel-mir-794
(9 sentences)

Sequence

1510 reads, 30 reads per million, 10 experiments
cugagcgugucucuUGAGGUAAUCAUCGUUGUCACUucgcaaaguuggaauUGAAAACGUUGUCUAUCUCGAAaggcuuaucag
((((....((((.((((((((..((.((((.(((.(((.((....))))).))).)))).))..)))))))).))))...))))

Structure
    gcgu    c        AU  U    G   C   g  a 
cuga    gucu uUGAGGUA  CA CGUU UCA Uuc ca a
||||    |||| ||||||||  || |||| ||| ||| ||  
gacu    cgga AGCUCUAU  GU GCAA AGU aag gu g
    -auu    A        CU  U    A   u   -  u 


Annotation confidence High
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Genome context
chrI: 12595690-12595773 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-794
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-794-5p

Accession MIMAT0004229
Description Caenorhabditis elegans cel-miR-794-5p mature miRNA
Sequence 15 - UGAGGUAAUCAUCGUUGUCACU - 36
Evidence experimental
454 [1], Illumina [2-3]
Database links
Predicted targets

Mature cel-miR-794-3p

Accession MIMAT0020352
Description Caenorhabditis elegans cel-miR-794-3p mature miRNA
Sequence 52 - UGAAAACGUUGUCUAUCUCGAA - 73
Evidence experimental
Illumina [3]
Database links

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  3. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577