miRBase entry: cel-mir-793

Stem-loop cel-mir-793


Accession
MI0005194
Description
Caenorhabditis elegans cel-mir-793 precursor miRNA

Literature search
3 open access papers mention cel-mir-793
(3 sentences)

Sequence

8334 reads, 85 reads per million, 15 experiments
ugguugguaaaagucuguuuaacuauuguacaucacaauuuucacugcgaaaaauUGAGGUAUCUUAGUUAGACAGAcauauacuacaacca
(((((((((...(((((((((((((..((((.(((...(((((.....)))))..))).))))..)))))))))))))...)))..))))))

Structure
      --   aaa             uu    a   caa     a 
ugguug  gua   gucuguuuaacua  guac uca   uuuuc c
||||||  |||   |||||||||||||  |||| |||   ||||| u
accaac  cau   cAGACAGAUUGAU  UAUG AGU   aaaag g
      au   aua             UC    G   -ua     c 


Annotation confidence Not enough data
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Genome context
chrX: 13857962-13858053 [+]

Database links

Mature cel-miR-793

Accession MIMAT0004228
Description Caenorhabditis elegans cel-miR-793 mature miRNA
Sequence 56 - UGAGGUAUCUUAGUUAGACAGA - 77
Evidence experimental
454 [1], Illumina [2], CLIPseq [3]
Database links
Predicted targets

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  3. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179