Stem-loop sequence cel-mir-793

AccessionMI0005194 (change log)
DescriptionCaenorhabditis elegans miR-793 stem-loop
Literature search

3 open access papers mention cel-mir-793
(3 sentences)

Stem-loop 
   u     --   aaa             uu    a   caa     a 
5'  gguug  gua   gucuguuuaacua  guac uca   uuuuc c
    |||||  |||   |||||||||||||  |||| |||   ||||| u
3'  ccaac  cau   cagacagauugau  uaug agu   aaaag g
   a     au   aua             uc    g   -ua     c
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Deep sequencing
10035 reads, 31.2 reads per million, 16 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (WBcel235; GCA_000002985.3) Overlapping transcripts
chrX: 13857962-13858053 [+]
intergenic
Database links

Mature sequence cel-miR-793

Accession MIMAT0004228
Sequence

56 -  

ugagguaucuuaguuagacaga

 - 77

Get sequence
Deep sequencing10027 reads, 16 experiments
Evidence experimental; 454 [1], Illumina [2], CLIPseq [3]
Database links
Predicted targets

References

1
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
3
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).