miRBase entry: cel-mir-790

Stem-loop cel-mir-790


Accession
MI0005191
Description
Caenorhabditis elegans cel-mir-790 precursor miRNA
Gene family
MIPF0000362; mir-790

Literature search
1 open access papers mention cel-mir-790
(1 sentences)

Sequence

10046 reads, 92 reads per million, 15 experiments
gccggCUUGGCACUCGCGAACACCGCGauuucacuuauaacucgCGGCGUUAGCUCUGUGUCAAACCggc
(((((.(((((((..((.(((.((((((((........)).)))))).))).))...))))))).)))))

Structure
     C       -UC  G   A      -  uca 
gccgg UUGGCAC   GC AAC CCGCGa uu   c
||||| |||||||   || ||| |||||| ||    
cggCC AACUGUG   CG UUG GGCgcu aa   u
     A       UCU  A   C      c  uau 


Annotation confidence High
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Genome context
chrIV: 5566422-5566491 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-790
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-790-5p

Accession MIMAT0004225
Description Caenorhabditis elegans cel-miR-790-5p mature miRNA
Sequence 6 - CUUGGCACUCGCGAACACCGCG - 27
Evidence experimental
454 [1], Illumina [2-3]
Database links
Predicted targets

Mature cel-miR-790-3p

Accession MIMAT0020349
Description Caenorhabditis elegans cel-miR-790-3p mature miRNA
Sequence 45 - CGGCGUUAGCUCUGUGUCAAACC - 67
Evidence experimental
Illumina [3]
Database links

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  3. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577