miRBase entry: cel-mir-789-1

Stem-loop cel-mir-789-1


Accession
MI0005189
Description
Caenorhabditis elegans cel-mir-789-1 precursor miRNA
Gene family
MIPF0000373; mir-789

Literature search
2 open access papers mention cel-mir-789-1
(2 sentences)

Sequence

712 reads, 28 reads per million, 14 experiments
uguccugaaggcaggcAAUUGAUGACCCAGACAAGGACuaaucaagauugucgaucuagUCCCUGCCUGGGUCACCAAUUGUcggcccccgcgggca
(((((((..(((.((((((((.((((((((.((.(((((((((.........))).)))))).)).)))))))).)))))))).)))..)).)))))

Structure
     -  aa   a        A        A  A      -   aag 
ugucc ug  ggc ggcAAUUG UGACCCAG CA GGACua auc   a
||||| ||  ||| |||||||| |||||||| || |||||| |||   u
acggg gc  ccg cUGUUAAC ACUGGGUC GU CCUgau uag   u
     c  cc   g        C        C  C      c   cug 


Annotation confidence High
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Genome context
chrIV: 16740693-16740789 [-]

Database links

Mature cel-miR-789-3p

Accession MIMAT0004224
Description Caenorhabditis elegans cel-miR-789-3p mature miRNA
Sequence 60 - UCCCUGCCUGGGUCACCAAUUGU - 82
Evidence experimental
454 [1], Illumina [2]
Database links
Predicted targets

Mature cel-miR-789-5p

Accession MIMAT0032016
Description Caenorhabditis elegans cel-miR-789-5p mature miRNA
Sequence 17 - AAUUGAUGACCCAGACAAGGAC - 38
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54