Stem-loop sequence ptc-MIR171k

Accession

MI0005114 (change log)

Description

Populus trichocarpa miR171k stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

6 open access papers mention ptc-MIR171k
(11 sentences)

Stem-loop

       c    u        c  c       uc    uga 
5' gaua uggc cgguucaa cu aucguag  uuga   a
   |||| |||| |||||||| || |||||||  ||||    
3' cuau accg gccgaguu gg ugguauc  aacu   u
       a    c        a  u       ua    uag 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

This sequence is a predicted homolog of a verified miRNA in Arabidopsis (E. Bonnet, pers. comm.).

Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000351.2: 5060947-5061024 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005114

Mature sequence ptc-miR171k

• Accession: MIMAT0003943
• Sequence: 58 - ggauugagccgcgccaauauc - 78
• Evidence: by similarity; MI0000989