miRBase entry: ath-MIR779

Stem-loop ath-MIR779


Accession
MI0005109
Description
Arabidopsis thaliana ath-MIR779 precursor miRNA

Literature search
2 open access papers mention ath-MIR779
(13 sentences)

Sequence

aaugagaguaauauaguugaaucuucgaaaguauuucaagaagucagcugagcuuucucgucaucacuuauuaguaaauauagucucuauauuuuugaugagugaUGAUUGGAAAUUUCGUUGACUcauuacucuugaugaUUCUGCUAUGUUGCUGCUCAUu
(((((((((((((((((.(((((.((((.((((.....(..(((((((.(((.(((((.(((((((((((((((.((((((((...))))))))))))))))))))))).))))).))))))))))..))))).)))).))))).))))))))))).))))))

Structure
      -           u     u    a    uuuca ga       u   c     c               u        u 
aaugag aguaauauagu gaauc ucga agua     a  agucagc gag uuucu gucaucacuuauuag aaauauag  
|||||| ||||||||||| ||||| |||| ||||     |  ||||||| ||| ||||| ||||||||||||||| |||||||| c
uUACUC UCGUUGUAUCG CUUag aguu ucau     u  UCAGUUG CUU AAAGG UAGUagugaguaguu uuuauauc  
      G           U     u    c    ----- ac       -   U     U               -        u 


Annotation confidence Not enough data
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Genome context
chr2: 9560761-9560923 [+]

Database links

Mature ath-miR779.2

Accession MIMAT0004329
Description Arabidopsis thaliana ath-miR779.2 mature miRNA
Sequence 106 - UGAUUGGAAAUUUCGUUGACU - 126
Evidence experimental
454 [3]

Mature ath-miR779.1

Accession MIMAT0003938
Description Arabidopsis thaliana ath-miR779.1 mature miRNA
Sequence 142 - UUCUGCUAUGUUGCUGCUCAU - 162
Evidence experimental
MPSS [1], Northern [1], 454 [2-3], cloned [2]

References

  1. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  2. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  3. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219