miRBase entry: ath-MIR774a

Stem-loop ath-MIR774a


Accession
MI0005104
Description
Arabidopsis thaliana ath-MIR774a precursor miRNA
Gene family
MIPF0001101; MIR774

Literature search
2 open access papers mention ath-MIR774a
(9 sentences)

Sequence

ucauuucagauggcuguuuggguaacuaauauuuaagauuuuggucaauuuaaguuaccaauuuauauaUUGGUUACCCAUAUGGCCAUCucaaauuu
..((((.((((((((((.((((((((((((((.((((...(((((.(((....)))))))))))).)))))))))))))).)))))))))).))))..

Structure
uc    c          u              u    auu     c   u 
  auuu agauggcugu uggguaacuaauau uaag   uuggu aau u
  |||| |||||||||| |||||||||||||| ||||   ||||| |||  
  uaaa uCUACCGGUA ACCCAUUGGUUaua auuu   aacca uug a
uu    c          U              u    ---     -   a 


Annotation confidence Not enough data
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Genome context
chr1: 22149936-22150033 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR774a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR774a

Accession MIMAT0003933
Description Arabidopsis thaliana ath-miR774a mature miRNA
Sequence 70 - UUGGUUACCCAUAUGGCCAUC - 90
Evidence experimental
MPSS [1], Northern [1], 454 [2]

References

  1. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  2. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219