Stem-loop sequence bta-mir-363

Accession

MI0005069 (change log)

Description

Bos taurus miR-363 stem-loop

Gene family

MIPF0000138; mir-363

Literature search

6 open access papers mention bta-mir-363
(15 sentences)

Stem-loop

   ug   u         ca  a         --ga   gu 
5'   uug cggguggau  cg ugcaauuuu    uua  a
     ||| |||||||||  || |||||||||    |||   
3'   agc gucuaccua  gc acguuaaaa    gau  u
   ca   -         ug  -         agag   aa 

Deep sequencing

6362 reads, 37 reads per million, 73 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 18021032-18021105 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-363

• bta-mir-106a: chrX: 18021857-18021937 [-]
• bta-mir-18b: chrX: 18021698-18021772 [-]
• bta-mir-20b: chrX: 18021463-18021531 [-]
• bta-mir-19b-2: chrX: 18021338-18021420 [-]
• bta-mir-92a-2: chrX: 18021187-18021254 [-]
• bta-mir-363: chrX: 18021032-18021105 [-]

Database links

• EntrezGene:MIR363
• miRBase Tracker:MI0005069

Mature sequence bta-miR-363

• Accession: MIMAT0003855
• Sequence: 51 - auugcacgguauccaucugcg - 71
• Deep sequencing: 6235 reads, 73 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-363

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).