miRBase entry: bta-let-7f-1

Stem-loop bta-let-7f-1


Accession
MI0005062
Description
Bos taurus bta-let-7f-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
59 open access papers mention bta-let-7f-1
(249 sentences)

Sequence

3069626 reads, 15133 reads per million, 77 experiments
ucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaacuauacaaucuauugccuucccuga
((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))

Structure
    a U                       ---------       u 
ucag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| | |||||||||||||||||||||||         ||||||| a
aguc c uuccguuaucuaacauaucaaua         ucccauu u
    - c                       gaggacuug       u 


Annotation confidence High
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Genome context
chr8: 87364207-87364293 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-let-7f-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-let-7f

Accession MIMAT0003519
Description Bos taurus bta-let-7f mature miRNA
Sequence 7 - UGAGGUAGUAGAUUGUAUAGUU - 28
Evidence experimental
cloned [1-3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343