Stem-loop sequence bta-mir-532

Accession

MI0005061 (change log)

Description

Bos taurus miR-532 stem-loop

Gene family

MIPF0000113; mir-188

Literature search

2 open access papers mention bta-mir-532
(3 sentences)

Stem-loop

   gacuugcuuu       a  u      a    a   cc  uggca 
5'           cucucuu ca gccuug gugu gga  gu     u
             ||||||| || |||||| |||| |||  ||     c
3'           gagagga gu cggaac caca ccu  ca     u
   -------acc       c  u      c    c   cc  uuaau 

Deep sequencing

25695 reads, 248 reads per million, 77 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 93935413-93935498 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-532

• bta-mir-532: chrX: 93935413-93935498 [+]
• bta-mir-188: chrX: 93935739-93935824 [+]
• bta-mir-502a-2: chrX: 93942730-93942819 [+]

Database links

• EntrezGene:MIR532
• RNAcentral:URS000075DA55_9913
• miRBase Tracker:MI0005061

Mature sequence bta-miR-532

• Accession: MIMAT0003848
• Sequence: 19 - caugccuugaguguaggaccgu - 40
• Deep sequencing: 24944 reads, 77 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-532

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).