miRBase entry: bta-mir-532

Stem-loop bta-mir-532


Accession
MI0005061
Description
Bos taurus bta-mir-532 precursor miRNA
Gene family
MIPF0000113; mir-188

Literature search
2 open access papers mention bta-mir-532
(3 sentences)

Sequence

18149 reads, 243 reads per million, 74 experiments
gacuugcuuucucucuuaCAUGCCUUGAGUGUAGGACCGUuggcaucuuaauuacccucccacacccaaggcuugcaggagagcca
..........(((((((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).)))))))...

Structure
gacuugcuuu       a  U      A    A   CC  uggca 
          cucucuu CA GCCUUG GUGU GGA  GU     u
          ||||||| || |||||| |||| |||  ||     c
          gagagga gu cggaac caca ccu  ca     u
-------acc       c  u      c    c   cc  uuaau 


Annotation confidence High
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Genome context
chrX: 93935413-93935498 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-532
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-532

Accession MIMAT0003848
Description Bos taurus bta-miR-532 mature miRNA
Sequence 19 - CAUGCCUUGAGUGUAGGACCGU - 40
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43