Stem-loop sequence bta-mir-487b

AccessionMI0005060 (change log)
DescriptionBos taurus miR-487b stem-loop
Gene family MIPF0000018; mir-154
Literature search

4 open access papers mention bta-mir-487b
(11 sentences)

Stem-loop 
   u       ug        uuau      c u     uuuua 
5'  ugguacu  gagagugg    cccugu c guucg     c
    |||||||  ||||||||    |||||| | |||||      
3'  acuauga  uuuucacc    gggaca g uaagc     u
   a       cu        uacu      u c     uguac
Get sequence
Deep sequencing
3502 reads, 0 reads per million, 63 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr21: 67861931-67862014 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-487b
bta-mir-154cchr21: 67853625-67853699 [+]
bta-mir-376echr21: 67856314-67856395 [+]
bta-mir-376cchr21: 67856685-67856770 [+]
bta-mir-376dchr21: 67857059-67857140 [+]
bta-mir-654chr21: 67857212-67857292 [+]
bta-mir-376bchr21: 67857435-67857527 [+]
bta-mir-376achr21: 67857794-67857892 [+]
bta-mir-1185chr21: 67859743-67859828 [+]
bta-mir-3956chr21: 67860482-67860579 [+]
bta-mir-381chr21: 67861446-67861520 [+]
bta-mir-487bchr21: 67861931-67862014 [+]
bta-mir-539chr21: 67862745-67862822 [+]
bta-mir-544achr21: 67864731-67864821 [+]
bta-mir-655chr21: 67865688-67865784 [+]
bta-mir-411cchr21: 67867851-67867924 [+]
bta-mir-487achr21: 67868237-67868316 [+]
bta-mir-3578chr21: 67871246-67871331 [-]
bta-mir-382chr21: 67871251-67871326 [+]
bta-mir-134chr21: 67871630-67871702 [+]
Database links

Mature sequence bta-miR-487b

Accession MIMAT0003847
Sequence

51 -  

aaucguacagggucauccacuu

 - 72

Get sequence
Deep sequencing3473 reads, 63 experiments
Evidence experimental; cloned [1]
Predicted targets

References

1
PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).