Stem-loop sequence bta-mir-7-3

Accession

MI0005056 (change log)

Previous IDs

bta-mir-7

Description

Bos taurus miR-7-3 stem-loop

Gene family

MIPF0000022; mir-7

Literature search

9 open access papers mention bta-mir-7-3
(18 sentences)

Stem-loop

   agacuggagcgguuguggucuagugcuguguggaagacua       u      c  au 
5'                                         gugauuu guuguu ug  g
                                           ||||||| |||||| ||   
3'                                         cacugaa caacag au  u
   -------------------------------------cga       -      u  ca 

Deep sequencing

4902 reads, 12.1 reads per million, 66 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr7: 20670457-20670538 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR7
• RNAcentral:URS000075E84F_9913
• miRBase Tracker:MI0005056

Mature sequence bta-miR-7

• Accession: MIMAT0003843
• Sequence: 31 - uggaagacuagugauuuuguuguu - 54
• Deep sequencing: 14706 reads, 66 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • TargetScanVert:bta-miR-7

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).