miRBase entry: bta-mir-10b

Stem-loop bta-mir-10b


Accession
MI0005052
Description
Bos taurus bta-mir-10b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
20 open access papers mention bta-mir-10b
(84 sentences)

Sequence

3087569 reads, 37824 reads per million, 71 experiments
cagugacguugucuauauaUACCCUGUAGAACCGAAUUUGUGugguauccauguagucacagauucgauucuaggggaauauauggucgaugcaaaaac
...((.(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).))))))).....

Structure
--cag  a     u        A    G     C          u g   c 
     ug cguug cuauauaU CCCU UAGAA CGAAUUUGUG g uau c
     || ||||| |||||||| |||| ||||| |||||||||| | |||  
     ac guagc gguauaua gggg aucuu gcuuagacac u aug a
caaaa  -     u        a    -     a          - g   u 


Annotation confidence Not enough data
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Genome context
chr2: 20876466-20876564 [-]

Database links

Mature bta-miR-10b

Accession MIMAT0003839
Description Bos taurus bta-miR-10b mature miRNA
Sequence 20 - UACCCUGUAGAACCGAAUUUGUG - 42
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988